@Jpersons44 We are aware of the bore probing soft limit issue. It will be fixed in the new release of CutControl this week.
Also, anytime you might suspect a limit switch issue the best way to troubleshoot is to make sure that they are enabled, and then go one by one and cycle the limit switch and make sure it is showing as triggered in CutControl. So for example, to test the X limit switch, click the switch in by hand and then release it. Then go to CutControl and clear the alarm. This will then allow you to see the status of the switches at the bottom when you click them. Then go cycle the X switch and watch in software and see if it is lighting up when you push it in. Then do the same for Y1, Y2, and Z. It’s possible that you have an intermittent wiring issue (e.g. blade connector not fully seated) that needs addressing.